PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0123s0250.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 247aa    MW: 28089.1 Da    PI: 10.3193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0123s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.92.9e-38141401128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWk 84 
                             lp G+rFhPtdeelvv+yLk+kv g +l++ +vi+e+d+++++Pw+Lp ++   +++ yfFs+++ +   g++ +r++    sgyWk
  SapurV1A.0123s0250.1.p  14 LPIGYRFHPTDEELVVHYLKRKVLGLPLPA-SVIPEFDVFQTDPWSLPGNL---KEKRYFFSQKKLND-FGTKCKRSAGsipSGYWK 95 
                             699***************************.99***************544...4578***9987765.5677777433344***** PP

                     NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               gk k+++++ +++ vg++ktLvf + ++++ ++t+Wvmhey l
  SapurV1A.0123s0250.1.p  96 PIGKGKQIVASgSRQPVGMRKTLVFRERNHSSKTRTQWVMHEYYL 140
                             *********9956677**********9999999**********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-4211165IPR003441NAC domain
PROSITE profilePS5100543.14614165IPR003441NAC domain
PfamPF023652.6E-2415139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MERPNFVENG GLRLPIGYRF HPTDEELVVH YLKRKVLGLP LPASVIPEFD VFQTDPWSLP  60
GNLKEKRYFF SQKKLNDFGT KCKRSAGSIP SGYWKPIGKG KQIVASGSRQ PVGMRKTLVF  120
RERNHSSKTR TQWVMHEYYL VGLPTDPKTT QMKVGDWVAS SIFHRKRKPK NHVVMISNPS  180
NINKTQNVEI ISPSFMDFMM EQSSDEPGAP SQCSSGVTEV SSNEFDQEEI SSFISRFSNP  240
CKRKRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-271216615166NAC domain-containing protein 19
4dul_A1e-271216615166NAC domain-containing protein 19
1ut7_B1e-271216615166NO APICAL MERISTEM PROTEIN
1ut7_A1e-271216615166NO APICAL MERISTEM PROTEIN
1ut4_B1e-271216615166NO APICAL MERISTEM PROTEIN
1ut4_A1e-271216615166NO APICAL MERISTEM PROTEIN
3swp_D1e-271216618169NAC domain-containing protein 19
3swp_C1e-271216618169NAC domain-containing protein 19
3swp_B1e-271216618169NAC domain-containing protein 19
3swp_A1e-271216618169NAC domain-containing protein 19
3swm_D1e-271216618169NAC domain-containing protein 19
3swm_C1e-271216618169NAC domain-containing protein 19
3swm_B1e-271216618169NAC domain-containing protein 19
3swm_A1e-271216618169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298652.21e-175hypothetical protein POPTR_0001s33260g
TrEMBLB9GF721e-175B9GF72_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33260.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-50NAC domain containing protein 83